Finally finished with the missions. Here is the deck list in the case anyone wants to try it out.
It mostly functions like any other INOV Metalfoes deck, minus Alkahest: Set up Counter, outresource the opponent, and probably OTK next turn. The twist is that I also run the Igknights; open two of them to search Great Shogun Shien, a floodgate monster you can pendulum summon out if your high scale is a Metalfoes. He prevents the opponent from activating more than one S/T per turn. Is it useful? Aside from winning the pendulum match-up it is rather hard to tell, as most other players usually prioritize getting rid of him. That is okay though, as that usually also trigger Metalfoes Counters. That, and you get style points Shien's summoning animation.
Generally, this deck has all the tools available to deal with the meta threats, with one exception.