Without this feature, microwaves would indeed feed back their energy into the magnetron, damaging it. However, impedance matching has been around since at least the 1960's - here is a link to the Patent for an impedance matching microwave, which has since become the norm: http://www.google.com/patents/US3235701
Note: this effect is likely marginal compared to high-load / no-load differences in power consumption for a microwave.
Water molecules with freedom of rotation are oscillated back and forth, increasing their kinetic energy. Water molecules locked in ice are not free to oscillate, and will not absorb much microwave energy. I don't think microwaves will significantly affect the gross velocity of water molecules, i.e. their kinetic energy in a particular direction; rather, they add a random vibration which we observe as thermal energy.
Microwaves are internally shielded by a Faraday Cage, which is lattice of conductors whose spacing is smaller than the typical wavelength of radiation which they shield. Microwaves are on the order of centimeters, so microwaves often have a screen over the door with sub-centimeter perforations. That is why microwaves don't just have a clear screen on the door.
A faraday cage blockes all such radiation, so waves will bounce around inside the microwave until they are absorbed by a load. this is why impedance matching is so important, and why older microwaves can destroy themselves quite rapidly.