Why the sense of doom?

wistfully mentioning the Philosopher's Stone before

[spoiler]Which he may already have!

"The Dementor is a distraction," Harry said. The coldness clear in his voice, since that was what Dumbledore wanted and expected. "A large, salient threat, but in the end straightforward, and easy to defend against. So while all your attention is focused on the Dementor, the real plot will be happening elsewhere."

Dumbledore stared at Harry for a moment, and then gave a slow nod. "Yes..." said the Headmaster. "And I do believe I know what it might be a distraction from, if Professor Quirrell means ill... thank you, Harry."

"The Dementor is a distraction," Harry said. The coldness clear in his voice, since that was what Dumbledore wanted and expected. "A large, salient threat, but in the end straightforward, and easy to defend against. So while all your attention is focused on the Dementor, the real plot will be happening elsewhere."

Dumbledore stared at Harry for a moment, and then gave a slow nod. "Yes..." said the Headmaster. "And I do believe I know what it might be a distraction from, if Professor Quirrell means ill... thank you, Harry."

And then he posts McGonagall to protect the Stone, but she left when Harry was Demented.

Professor McGonagall came and spoke to Harry. She hadn't seen the worst of it, so there was only a slight glitter of water in her eyes. Harry told her that he needed to talk to her afterward and ask a question he'd put off for a while, but that didn't need to happen right now, if she was busy. There was a certain look about her which suggested that she had been pulled away from something important; and Harry observed this to her, and said that she honestly didn't need to feel guilty about leaving. This earned him something of a sharp look, but then leave she did, hurriedly, with a promise that they would talk later.

Months later, Quirrel and Snape talk:

"As to that," said Professor Quirrell, sounding bored again, "I stole it months ago, and left a fake in its place. But thank you kindly for asking."

"You're lying," said Severus Snape after a pause.

"Yes, I am." Professor Quirrell leaned back against the grey wood again, his eyes drifting up to the dense net of branches, the falling night scarcely visible between the complex crossings. "I simply wished to learn whether you would call me on it, since you are pretending to know so little." The Defense Professor smiled to himself.[/spoiler]

/r/HPMOR Thread