It's really not that hard if you've found all the towns and have enough rupees. You can easily buy one or two hundred from all the shops combined and lots of chests have them, lots of enemies drop them and you can find random ones in crates. That weirdo Beedle will usually sell you arrows even if you have more than whatever the limit is before shops restock, so if you have the rupees just make sure to buy his entire stock every time you see him.
If you're strong enough, the elemental lynels usually drop 20= special arrows. One fire one I fought dropped 50 afire arrows.
I was usually always at around 300 arrows of every type, give or take a hundred. It was hard at the start of the game but afterwards it was easy to maintain a few hundred of every type.