Didn't even know you could change resources with IH, i only use it to add more realism/difficulty.
Here are the ones i'd recommend (And the shortcuts i've noted for IH r217, if other version you can find them with a quick ctrl+f on the html documentation included in the IH zip file):
Time Scale (the most important imo):
Support Heli:
15.8: Start Free Roam on foot (you skip the one-minute helicopter intro)
15.10: Start Mother Base on foot (same on MB)
Player Settings:
Enemy Preparedness:
7.5.1: Resupply in 10 missions (or else the constant need for combat deployment quickly becomes a chore)
7.10: Random CP subtype in Free Roam
7.12: IH interrogation in Free Roam
Patrols & Deployment (skip this part if you're not looking to increase difficulty):
9.1: Foot patrols in Free Roam (for the occasional jumpscare when you're roaming through supposedly empty areas)
9.3: Heli patrols in Free Roam (i disable it when i want to play non-lethal)
9.6: Walker gears in Free Roam (because why the Hell not ?)
9.8: Vehicle patrols in FR - each differing type (Tanks and IFVs everywhere, yummy! )
9.9: Vehicle patrol class - dark grey (the red ones don't look realistic enough, and the default ones are too soft)
9.15: Equipment on trucks
Side Ops
Mother Base (use following to get tons of female soldiers quickly):
11.22: Women in Enemy invasion - 100%
11.23: Mother Base wargames - Enemy invasion (warning, once you return to MB, you'll be in enemy territory!)
Now go, equip "none" for primary and secondary weapons, and let the legend come back to life :p